Create dependency structure of your package collection

dependency_table(
  project = ".",
  project_type = c("local", "repo@host")[1],
  ref = NULL,
  local_repos = if ((project_type) == "local") get_local_pkgs_from_config() else NULL,
  direction = "all",
  fallback_branch = "main",
  renv_profile = NULL,
  verbose = 1
)

Arguments

project: (character) If project_type is local then directory of project (for which to calculate the dependency structure); must be a git repository. If project_type is repo@host then should be character of the form openpharma/stageddeps.food@https://github.com If host is not included in the string then the default https://github.com is assumed.
project_type: (character) See project argument.
ref: (character) git branch (or tag) inferred from the branch of the project if not provided; warning if not consistent with current branch of project. If project_type is not local then this argument must be provided.
local_repos: (data.frame) repositories that should be taken from local file system rather than cloned; columns are repo, host, directory.
direction: (character) direction in which to discover packages either "upstream","downstream" or "all".
fallback_branch: (character) the default branch to try to use if no other matches found. It defaults to "main".
renv_profile: (character) the name of the renv profile of the renv.lock files to be included from the repos. The standard renv.lock file uses the default NULL argument here.
verbose: (numeric)
verbosity level, incremental; (0: None, 1: packages that get installed + high-level git operations, 2: includes git checkout infos)

Value

dependency_structure An S3 object with the following items:

project: project argument used to create the object (absolute path if project_type is local
project_type: project_type used to create object
current_pkg: The R package name of code in the project directory
table: data.frame contain one row per r package discovered, with the following rows package_name, type (current, upstream, downstream or other), distance (minimum number of steps from current_pkg), ref, repo, host, sha cache_dir, accessible, installable and install_index (the order to install the packages). Note some items are are suppressed when printing the object
deps: list with three elements, upstream_depsis the graph where edges point from a package to its upstream dependencies. They are ordered in installation order. The downstream_deps list is the graph with the edge direction flipped, and is ordered in reverse installation order. external contains the external R packages found in the description files of the internal packages. It is a dataframe of the form returned by desc::desc_get_deps
direction: direction argument used to create object
renv_files: named list containing the json of the renv.lock files for the chosen profile for each repo. An entry to the list is NULL if a repos does not have the required lock file

Examples

if (FALSE) {
dependency_table(verbose = 1)
dependency_table(
  project = "openpharma/stageddeps.food@https://github.com",
  project_type = "repo@host",
  ref = "main"
)
x <- dependency_table(
  project = "path/to/project",
  direction = c("upstream")
)
print(x)
plot(x)
}