Package index • graphicalMCP

Creating an initial graph

graph_create(): Create the initial graph for a multiple comparison procedure

print(<initial_graph>): S3 print method for the class initial_graph

plot(<initial_graph>): S3 plot method for class initial_graph

as_initial_graph() as_graphMCP() as_igraph(): Convert between graphicalMCP, gMCP, and igraph graph classes

Updating a graph

graph_update(): Obtain an updated graph by updating an initial graphical after deleting hypotheses

print(<updated_graph>): S3 print method for the class updated_graph

plot(<updated_graph>): S3 plot method for the class updated_graph

Calculating hypothesis weights in a closure

graph_generate_weights(): Generate the weighting strategy based on a graphical multiple comparison procedure

Testing a graphical multiple comparison procedure

graph_test_closure(): Perform closed graphical multiple comparison procedures

graph_test_shortcut(): Perform shortcut (sequentially rejective) graphical multiple comparison procedures

print(<graph_report>): S3 print method for the class graph_report

graph_rejection_orderings(): Find alternate rejection orderings (sequences) for shortcut tests

adjust_p_bonferroni() adjust_p_parametric() adjust_p_simes() adjust_p_hochberg(): Calculate adjusted p-values

adjust_weights_parametric() adjust_weights_simes() adjust_weights_hochberg(): Calculate adjusted hypothesis weights

Power simulation

graph_calculate_power(): Calculate power values for a graphical multiple comparison procedure

print(<power_report>): S3 print method for the class power_report

Example graphs

bonferroni() bonferroni_weighted() bonferroni_holm() bonferroni_holm_weighted() dunnett_single_step() dunnett_single_step_weighted() dunnett_closure_weighted() hochberg() hommel() huque_etal() fallback() fallback_improved_1() fallback_improved_2() fixed_sequence() sidak() simple_successive_1() simple_successive_2() two_doses_two_primary_two_secondary() three_doses_two_primary_two_secondary() random_graph(): Example graphs of commonly used multiple comparison procedures