Package index • graphicalMCP

Creating an initial graph

graph_create(): Create the initial graph for a multiple comparison procedure
print(<initial_graph>): S3 print method for the class initial_graph
plot(<initial_graph>): S3 plot method for class initial_graph
as_initial_graph() as_graphMCP() as_igraph(): Convert between graphicalMCP, gMCP, and igraph graph classes

graph_update(): Obtain an updated graph by updating an initial graphical after deleting hypotheses
print(<updated_graph>): S3 print method for the class updated_graph
plot(<updated_graph>): S3 plot method for the class updated_graph

graph_generate_weights(): Generate the weighting strategy based on a graphical multiple comparison procedure

graph_test_closure(): Perform closed graphical multiple comparison procedures
graph_test_shortcut(): Perform shortcut (sequentially rejective) graphical multiple comparison procedures
print(<graph_report>): S3 print method for the class graph_report
graph_rejection_orderings(): Find alternate rejection orderings (sequences) for shortcut tests
adjust_p_bonferroni() adjust_p_parametric() adjust_p_simes() adjust_p_hochberg(): Calculate adjusted p-values
adjust_weights_parametric() adjust_weights_simes() adjust_weights_hochberg(): Calculate adjusted hypothesis weights

graph_test_shortcut_gsd(): Perform shortcut graphical multiple comparison procedures with group sequential designs
print(<gsd_graph_report>): S3 print method for the class gsd_graph_report
repeated_p(): Calculate the repeated p-value for a single hypothesis at a given analysis
sequential_p(): Calculate the sequential p-value for a single hypothesis
spending_of() spending_pocock() spending_hsd() spending_linear(): Alpha spending functions for group sequential designs
spending_wt(): Wang-Tsiatis spending function
spending_with_time(): Create a spending function with a custom spending time
gs_boundaries(): Compute group sequential boundaries from an alpha spending function
gs_corr(): Compute the correlation matrix for group sequential test statistics

graph_calculate_power(): Calculate power values for a graphical multiple comparison procedure
print(<power_report>): S3 print method for the class power_report

bonferroni() bonferroni_weighted() bonferroni_holm() bonferroni_holm_weighted() dunnett_single_step() dunnett_single_step_weighted() dunnett_closure_weighted() hochberg() hommel() huque_etal() fallback() fallback_improved_1() fallback_improved_2() fixed_sequence() sidak() simple_successive_1() simple_successive_2() two_doses_two_primary_two_secondary() three_doses_two_primary_two_secondary() random_graph(): Example graphs of commonly used multiple comparison procedures