Package index • clinsight

Test ClinSight

To test clinsight with either internal data or with custom data.

test_clinsight(): Test ClinSight

Customize ClinSight

To prepare custom clinical trial data for use with ClinSight

create_clinsight_config(): Create custom ClinSight configuration file

create_clinsight_metadata(): Create custom ClinSight metadata

get_raw_csv_data(): Get raw data from CSV files

get_metadata(): Load metadata

merge_meta_with_data(): Merge metadata with raw data

Main application

Top-level functions to run the Shiny application

run_app(): Run the Shiny Application

app_ui(): The application User-Interface

app_server(): App Server

Application modules

Modules used in the main Shiny application.

mod_start_page_server(): Start page - Shiny module Server

mod_start_page_ui(): Start page - Shiny module UI

mod_main_sidebar_server(): App sidebar - Shiny module Server

mod_main_sidebar_ui(): App sidebar - Shiny module UI

mod_header_widgets_server(): Header widgets - Shiny module Server

mod_header_widgets_ui(): Header widgets - Shiny module UI

mod_common_forms_server(): Common forms - Shiny module Server

mod_common_forms_ui(): Common forms - Shiny module UI

mod_study_forms_server(): Study forms - Shiny module Server

mod_study_forms_ui(): Study forms - Shiny module UI

mod_db_synch_info_server(): Database Synchronization information - Shiny module Server

mod_db_synch_info_ui(): Database Synchronization information - Shiny module UI

mod_go_to_form_server(): Go to form - Shiny module Server

mod_go_to_form_ui(): Go to form - Shiny module UI

mod_navigate_forms_server(): Navigate forms - Shiny module Server

mod_navigate_forms_ui(): Navigate forms - Shiny module UI

mod_navigate_participants_server(): Navigate participants - Shiny module Server

mod_navigate_participants_ui(): Navigate participants - Shiny module UI

mod_navigate_review_server(): Navigate review tables - Shiny module Server

mod_navigate_review_ui(): Navigate review tables - Shiny module UI

mod_queries_server(): Queries - Shiny module Server

mod_queries_ui(): Queries - Shiny module UI

mod_query_add_server(): Write Query - Shiny module Server

mod_query_add_ui(): Write Query - Shiny module UI

mod_query_follow_up_server(): Add follow-up to a query - Shiny module Server

mod_query_follow_up_ui(): Add follow-up to a query - Shiny module UI

mod_report_server(): Create Report - Shiny module Server

mod_report_ui(): Create Report - Shiny module UI

mod_review_config_server(): Review configuration - Shiny module Server

mod_review_config_ui(): Review configuration - Shiny module UI

mod_review_form_tbl_server(): Review forms table - Shiny module Server

mod_review_form_tbl_ui(): Review forms table - Shiny module UI

mod_review_forms_server(): Review form - Shiny module Server

mod_review_forms_ui(): Review form - Shiny module UI

mod_timeline_server(): Interactive timeline - Shiny module Server

mod_timeline_ui(): Interactive timeline - Shiny module UI

Create wide-form tables

S3 method for creating wide-form study-specific tables.

create_table(): Create table

create_table(<default>): Create wide table

create_table(<adverse_events>): Create Adverse Events table

create_table(<bm_cytology>): Create BM Cytology Table

create_table(<common_forms>): Create Default 'Common Events' Table

create_table(<conc_procedures>): Create Concomitant Procedures Table

create_table(<continuous>): Create Table with continuous data.

create_table(<general>): Get general data

create_table(<medical_history>): Create Medical History Table

create_table(<medication>): Create Concomitant Medication Table

Data frame functions

Can be used on study data compatible with ClinSight

get_available_data(): Get available data

get_review_data(): Get review data

get_static_overview_data(): Create static overview data

Database functions

Create, read or append the app database.

get_db_connection(): Connect to database

db_create(): Create app database

db_update(): Update app database

update_review_data(): Update review data

collect_query_data(): Collect query data

db_get_review(): Retrieve review

db_get_query(): Retrieve query from database

Internal data

metadata: Application Metadata

clinsightful_data: Clinical Trial test data

Helper functions

filter_data(): Filter app data

collapse_column_vals(): Collapse column values

get_base_value(): Get base value

get_test_results(): Get package test results