Get specific parameter samples and produce a data.frame

Here you have to specify with pos which parameter you would like to extract from the Samples object

Usage

# S4 method for Samples,character
get(x, pos = -1L, envir = NULL, mode = NULL, inherits = NULL)

Arguments

x

the Samples object

pos

the name of the parameter

envir

for vectorial parameters, you can give the indices of the elements you would like to extract. If NULL, the whole vector samples will be returned

mode

not used

inherits

not used

Value

the data frame suitable for use with ggmcmc

Examples

# nolint start

# Create some data
data <- Data(x = c(0.1, 0.5, 1.5, 3, 6, 10, 10, 10),
             y = c(0, 0, 0, 0, 0, 0, 1, 0),
             cohort = c(0, 1, 2, 3, 4, 5, 5, 5),
             doseGrid = c(0.1, 0.5, 1.5, 3, 6,
                          seq(from = 10, to = 80, by=2)))
#> Used default patient IDs!

# Initialize a model 
model <- LogisticLogNormal(mean = c(-0.85, 1),
                           cov = matrix(c(1, -0.5, -0.5, 1), nrow = 2),
                           ref_dose = 56)

# Get posterior for all model parameters
options <- McmcOptions(burnin = 100,
                       step = 2,
                       samples = 2000)
set.seed(94)
samples <- mcmc(data, model, options)

# now extract the alpha0 samples (intercept of the regression model)
alpha0samples <- get(samples, "alpha0")

# nolint end